J6_7JT2_002

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

7JT2|1|1|U|2076, 7JT2|1|1|U|2390, 7JT2|1|1|U|2423, 7JT2|1|1|G|2428, 7JT2|1|1|A|2430, 7JT2|1|1|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JT2|1|1|U|2074
7JT2|1|1|U|2075
7JT2|1|1|U|2076
7JT2|1|1|A|2077
*
7JT2|1|1|U|2243
7JT2|1|1|U|2244
7JT2|1|1|U|2245
7JT2|1|1|G|2246
*
7JT2|1|1|C|2258
7JT2|1|1|U|2259
*
7JT2|1|1|A|2281
7JT2|1|1|G|2282
7JT2|1|1|C|2283
7JT2|1|1|A|2284
*
7JT2|1|1|U|2384
7JT2|1|1|C|2385
7JT2|1|1|A|2386
7JT2|1|1|U|2387
7JT2|1|1|A|2388
7JT2|1|1|G|2389
7JT2|1|1|U|2390
7JT2|1|1|G|2391
7JT2|1|1|A|2392
7JT2|1|1|U|2393
7JT2|1|1|C|2394
7JT2|1|1|C|2395
*
7JT2|1|1|G|2421
7JT2|1|1|C|2422
7JT2|1|1|U|2423
7JT2|1|1|C|2424
7JT2|1|1|A|2425
7JT2|1|1|A|2426
7JT2|1|1|C|2427
7JT2|1|1|G|2428
7JT2|1|1|G|2429
7JT2|1|1|A|2430
7JT2|1|1|U|2431
7JT2|1|1|A|2432
7JT2|1|1|A|2433
7JT2|1|1|A|2434
7JT2|1|1|A|2435

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35

Chain b

50S ribosomal protein L2

Chain l

50S ribosomal protein L15

Chain w

50S ribosomal protein L27

Chain x

50S ribosomal protein L28