3D structure

PDB id
7K52 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
7K52|1|1|U|2076, 7K52|1|1|U|2390, 7K52|1|1|G|2428, 7K52|1|1|A|2430, 7K52|1|1|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7K52|1|1|U|2074
7K52|1|1|U|2075
7K52|1|1|U|2076
7K52|1|1|A|2077
*
7K52|1|1|U|2243
7K52|1|1|U|2244
7K52|1|1|U|2245
7K52|1|1|G|2246
*
7K52|1|1|C|2258
7K52|1|1|U|2259
*
7K52|1|1|A|2281
7K52|1|1|G|2282
7K52|1|1|C|2283
7K52|1|1|A|2284
*
7K52|1|1|U|2384
7K52|1|1|C|2385
7K52|1|1|A|2386
7K52|1|1|U|2387
7K52|1|1|A|2388
7K52|1|1|G|2389
7K52|1|1|U|2390
7K52|1|1|G|2391
7K52|1|1|A|2392
7K52|1|1|U|2393
7K52|1|1|C|2394
7K52|1|1|C|2395
*
7K52|1|1|G|2421
7K52|1|1|C|2422
7K52|1|1|U|2423
7K52|1|1|C|2424
7K52|1|1|A|2425
7K52|1|1|A|2426
7K52|1|1|C|2427
7K52|1|1|G|2428
7K52|1|1|G|2429
7K52|1|1|A|2430
7K52|1|1|U|2431
7K52|1|1|A|2432
7K52|1|1|A|2433
7K52|1|1|A|2434
7K52|1|1|A|2435

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain C
50S ribosomal protein L33
Chain E
50S ribosomal protein L35
Chain b
50S ribosomal protein L2
Chain l
50S ribosomal protein L15
Chain w
50S ribosomal protein L27
Chain x
50S ribosomal protein L28

Coloring options:

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