J6_7MD7_004
3D structure
- PDB id
- 7MD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 7MD7|1|2A|U|2076, 7MD7|1|2A|A|2388, 7MD7|1|2A|U|2390, 7MD7|1|2A|G|2428, 7MD7|1|2A|A|2430, 7MD7|1|2A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MD7|1|2A|U|2074
7MD7|1|2A|U|2075
7MD7|1|2A|U|2076
7MD7|1|2A|A|2077
*
7MD7|1|2A|U|2243
7MD7|1|2A|U|2244
7MD7|1|2A|U|2245
7MD7|1|2A|G|2246
*
7MD7|1|2A|C|2258
7MD7|1|2A|G|2259
*
7MD7|1|2A|C|2281
7MD7|1|2A|G|2282
7MD7|1|2A|C|2283
7MD7|1|2A|C|2284
*
7MD7|1|2A|G|2384
7MD7|1|2A|C|2385
7MD7|1|2A|C|2386
7MD7|1|2A|U|2387
7MD7|1|2A|A|2388
7MD7|1|2A|G|2389
7MD7|1|2A|U|2390
7MD7|1|2A|G|2391
7MD7|1|2A|A|2392
7MD7|1|2A|A|2393
7MD7|1|2A|C|2394
7MD7|1|2A|C|2395
*
7MD7|1|2A|G|2421
7MD7|1|2A|A|2422
7MD7|1|2A|U|2423
7MD7|1|2A|C|2424
7MD7|1|2A|A|2425
7MD7|1|2A|A|2426
7MD7|1|2A|C|2427
7MD7|1|2A|G|2428
7MD7|1|2A|G|2429
7MD7|1|2A|A|2430
7MD7|1|2A|U|2431
7MD7|1|2A|A|2432
7MD7|1|2A|A|2433
7MD7|1|2A|A|2434
7MD7|1|2A|A|2435
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
- Chain 2Z
- 50S ribosomal protein L25
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