3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
7MDZ|1|5|C|1501, 7MDZ|1|5|G|1502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7MDZ|1|5|C|1352
7MDZ|1|5|G|1353
7MDZ|1|5|A|1354
7MDZ|1|5|G|1355
*
7MDZ|1|5|C|1384
7MDZ|1|5|G|1385
7MDZ|1|5|C|1386
7MDZ|1|5|A|1387
7MDZ|1|5|A|1388
*
7MDZ|1|5|U|1395
7MDZ|1|5|G|1396
7MDZ|1|5|A|1397
7MDZ|1|5|A|1398
7MDZ|1|5|G|1399
*
7MDZ|1|5|C|1418
7MDZ|1|5|G|1419
7MDZ|1|5|A|1420
7MDZ|1|5|G|1421
*
7MDZ|1|5|C|1464
7MDZ|1|5|G|1465
7MDZ|1|5|G|1466
*
7MDZ|1|5|C|1499
7MDZ|1|5|A|1500
7MDZ|1|5|C|1501
7MDZ|1|5|G|1502
7MDZ|1|5|A|1503
7MDZ|1|5|G|1504

Current chains

Chain 5
28S rRNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain L
60S ribosomal protein L13
Chain Q
Ribosomal protein L18
Chain a
60S ribosomal protein L27a
Chain b
60S ribosomal protein L29
Chain i
60S ribosomal protein L36

Coloring options:

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