J6_7NBU_001

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGGAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

7NBU|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NBU|1|a|G|45
7NBU|1|a|G|46
*
7NBU|1|a|C|179
7NBU|1|a|G|180
7NBU|1|a|A|181
7NBU|1|a|A|182
7NBU|1|a|C|183
*
7NBU|1|a|G|214
7NBU|1|a|G|215
7NBU|1|a|A|216
7NBU|1|a|A|217
7NBU|1|a|A|218
7NBU|1|a|A|219
7NBU|1|a|G|220
7NBU|1|a|A|221
7NBU|1|a|A|222
7NBU|1|a|A|223
7NBU|1|a|U|224
*
7NBU|1|a|A|231
7NBU|1|a|G|232
7NBU|1|a|A|233
7NBU|1|a|U|234
7NBU|1|a|U|235
*
7NBU|1|a|A|262
7NBU|1|a|G|263
7NBU|1|a|G|264
7NBU|1|a|A|265
7NBU|1|a|G|266
*
7NBU|1|a|C|426
7NBU|1|a|U|427
7NBU|1|a|A|428
7NBU|1|a|A|429
7NBU|1|a|A|430
7NBU|1|a|U|431
7NBU|1|a|A|432
7NBU|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34