J6_7NHL_001

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

7NHL|1|A|C|184, 7NHL|1|A|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NHL|1|A|G|45
7NHL|1|A|C|46
*
7NHL|1|A|G|181
7NHL|1|A|C|182
7NHL|1|A|A|183
7NHL|1|A|C|184
7NHL|1|A|A|185
7NHL|1|A|C|186
*
7NHL|1|A|G|217
7NHL|1|A|G|218
7NHL|1|A|A|219
7NHL|1|A|A|220
7NHL|1|A|G|221
7NHL|1|A|A|222
7NHL|1|A|G|223
7NHL|1|A|A|224
7NHL|1|A|A|225
7NHL|1|A|A|226
7NHL|1|A|G|227
*
7NHL|1|A|C|234
7NHL|1|A|G|235
7NHL|1|A|A|236
7NHL|1|A|U|237
7NHL|1|A|U|238
*
7NHL|1|A|A|265
7NHL|1|A|A|266
7NHL|1|A|G|267
7NHL|1|A|A|268
7NHL|1|A|G|269
*
7NHL|1|A|C|472
7NHL|1|A|U|473
7NHL|1|A|A|474
7NHL|1|A|A|475
7NHL|1|A|A|476
7NHL|1|A|U|477
7NHL|1|A|A|478
7NHL|1|A|C|479

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain I

50S ribosomal protein L4