3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
7NRC|1|LA|A|67, 7NRC|1|LA|U|329, 7NRC|1|LC|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NRC|1|LA|G|22
7NRC|1|LA|A|23
7NRC|1|LA|G|24
7NRC|1|LA|U|25
7NRC|1|LA|A|26
7NRC|1|LA|C|27
*
7NRC|1|LA|G|58
7NRC|1|LA|G|59
7NRC|1|LA|A|60
7NRC|1|LA|A|61
7NRC|1|LA|A|62
7NRC|1|LA|A|63
7NRC|1|LA|G|64
7NRC|1|LA|A|65
7NRC|1|LA|A|66
7NRC|1|LA|A|67
7NRC|1|LA|C|68
*
7NRC|1|LA|G|75
7NRC|1|LA|G|76
7NRC|1|LA|A|77
7NRC|1|LA|U|78
7NRC|1|LA|U|79
*
7NRC|1|LA|A|106
7NRC|1|LA|A|107
7NRC|1|LA|A|108
7NRC|1|LA|A|109
7NRC|1|LA|G|110
*
7NRC|1|LA|C|321
7NRC|1|LA|U|322
7NRC|1|LA|A|323
7NRC|1|LA|A|324
7NRC|1|LA|A|325
7NRC|1|LA|U|326
7NRC|1|LA|A|327
7NRC|1|LA|U|328
7NRC|1|LA|U|329
7NRC|1|LA|G|330
7NRC|1|LA|G|331
*
7NRC|1|LC|C|32
7NRC|1|LC|A|33
7NRC|1|LC|U|34
7NRC|1|LC|C|35

Current chains

Chain LA
25S rRNA (3184-MER)
Chain LC
5.8S rRNA (158-MER)

Nearby chains

Chain LF
60S ribosomal protein L4-A
Chain LN
60S ribosomal protein L13-A
Chain LP
60S ribosomal protein L15-A
Chain Lj
60S ribosomal protein L35-A
Chain Lk
60S ribosomal protein L36-A
Chain Ll
60S ribosomal protein L37-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3531 s