3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
Length
38 nucleotides
Bulged bases
7NRC|1|LA|G|2418, 7NRC|1|LA|A|2799, 7NRC|1|LA|A|2801, 7NRC|1|LA|A|2802
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NRC|1|LA|U|2416
7NRC|1|LA|U|2417
7NRC|1|LA|G|2418
7NRC|1|LA|A|2419
*
7NRC|1|LA|U|2611
7NRC|1|LA|U|2612
7NRC|1|LA|U|2613
7NRC|1|LA|G|2614
*
7NRC|1|LA|C|2627
7NRC|1|LA|A|2628
*
7NRC|1|LA|U|2650
7NRC|1|LA|G|2651
7NRC|1|LA|U|2652
7NRC|1|LA|C|2653
*
7NRC|1|LA|G|2754
7NRC|1|LA|C|2755
7NRC|1|LA|C|2756
7NRC|1|LA|U|2757
7NRC|1|LA|A|2758
7NRC|1|LA|U|2759
7NRC|1|LA|C|2760
7NRC|1|LA|G|2761
7NRC|1|LA|A|2762
7NRC|1|LA|U|2763
7NRC|1|LA|C|2764
7NRC|1|LA|C|2765
*
7NRC|1|LA|G|2793
7NRC|1|LA|G|2794
7NRC|1|LA|U|2795
7NRC|1|LA|G|2796
7NRC|1|LA|C|2797
7NRC|1|LA|C|2798
7NRC|1|LA|A|2799
7NRC|1|LA|G|2800
7NRC|1|LA|A|2801
7NRC|1|LA|A|2802
7NRC|1|LA|A|2803
7NRC|1|LA|A|2804

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LD
60S ribosomal protein L2-A
Chain LP
60S ribosomal protein L15-A
Chain LS
60S ribosomal protein L18-A
Chain LV
60S ribosomal protein L21-A
Chain Lc
60S ribosomal protein L28
Chain Ld
60S ribosomal protein L29
Chain Lq
60S ribosomal protein L42-A
Chain Ls
eiF5A

Coloring options:

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