J6_7NWH_003

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUGA*UUUG*CA*UGUCC*GGCCUCACGAUCC*GGUGUCAGAAAA

Length

40 nucleotides

Bulged bases

7NWH|1|5|G|3922, 7NWH|1|5|A|4376, 7NWH|1|5|A|4378, 7NWH|1|5|A|4379, 7NWH|1|5|A|4380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWH|1|5|U|3920
7NWH|1|5|U|3921
7NWH|1|5|G|3922
7NWH|1|5|A|3923
*
7NWH|1|5|U|4188
7NWH|1|5|U|4189
7NWH|1|5|U|4190
7NWH|1|5|G|4191
*
7NWH|1|5|C|4204
7NWH|1|5|A|4205
*
7NWH|1|5|U|4227
7NWH|1|5|G|4228
7NWH|1|5|U|4229
7NWH|1|5|C|4230
7NWH|1|5|C|4231
*
7NWH|1|5|G|4330
7NWH|1|5|G|4331
7NWH|1|5|C|4332
7NWH|1|5|C|4333
7NWH|1|5|U|4334
7NWH|1|5|C|4335
7NWH|1|5|A|4336
7NWH|1|5|C|4337
7NWH|1|5|G|4338
7NWH|1|5|A|4339
7NWH|1|5|U|4340
7NWH|1|5|C|4341
7NWH|1|5|C|4342
*
7NWH|1|5|G|4370
7NWH|1|5|G|4371
7NWH|1|5|U|4372
7NWH|1|5|G|4373
7NWH|1|5|U|4374
7NWH|1|5|C|4375
7NWH|1|5|A|4376
7NWH|1|5|G|4377
7NWH|1|5|A|4378
7NWH|1|5|A|4379
7NWH|1|5|A|4380
7NWH|1|5|A|4381

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain N

Ribosomal protein L15

Chain Q

eL18

Chain T

eL21

Chain a

60S ribosomal protein L27a

Chain o

eL42