J6_7O5B_001

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GC*GCAGAC*GGAAGAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

7O5B|1|X|G|184, 7O5B|1|X|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|X|G|45
7O5B|1|X|C|46
*
7O5B|1|X|G|181
7O5B|1|X|C|182
7O5B|1|X|A|183
7O5B|1|X|G|184
7O5B|1|X|A|185
7O5B|1|X|C|186
*
7O5B|1|X|G|217
7O5B|1|X|G|218
7O5B|1|X|A|219
7O5B|1|X|A|220
7O5B|1|X|G|221
7O5B|1|X|A|222
7O5B|1|X|G|223
7O5B|1|X|A|224
7O5B|1|X|A|225
7O5B|1|X|A|226
7O5B|1|X|G|227
*
7O5B|1|X|C|234
7O5B|1|X|G|235
7O5B|1|X|A|236
7O5B|1|X|U|237
7O5B|1|X|U|238
*
7O5B|1|X|A|265
7O5B|1|X|U|266
7O5B|1|X|C|267
7O5B|1|X|A|268
7O5B|1|X|G|269
*
7O5B|1|X|C|473
7O5B|1|X|U|474
7O5B|1|X|A|475
7O5B|1|X|A|476
7O5B|1|X|A|477
7O5B|1|X|U|478
7O5B|1|X|A|479
7O5B|1|X|C|480

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 2

50S ribosomal protein L34

Chain b

50S ribosomal protein L4