J6_7O7Y_002
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 7O7Y|1|B5|C|1456, 7O7Y|1|B5|G|1457
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Y|1|B5|C|1296
7O7Y|1|B5|G|1297
7O7Y|1|B5|A|1298
7O7Y|1|B5|G|1299
*
7O7Y|1|B5|C|1328
7O7Y|1|B5|G|1329
7O7Y|1|B5|C|1330
7O7Y|1|B5|A|1331
7O7Y|1|B5|A|1332
*
7O7Y|1|B5|U|1339
7O7Y|1|B5|G|1340
7O7Y|1|B5|A|1341
7O7Y|1|B5|A|1342
7O7Y|1|B5|G|1343
*
7O7Y|1|B5|C|1373
7O7Y|1|B5|G|1374
7O7Y|1|B5|A|1375
7O7Y|1|B5|G|1376
*
7O7Y|1|B5|C|1419
7O7Y|1|B5|G|1420
7O7Y|1|B5|G|1421
*
7O7Y|1|B5|C|1454
7O7Y|1|B5|A|1455
7O7Y|1|B5|C|1456
7O7Y|1|B5|G|1457
7O7Y|1|B5|A|1458
7O7Y|1|B5|G|1459
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BL
- Ribosomal protein eL13
- Chain BQ
- Ribosomal Protein eL18
- Chain BT
- eL21
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
- Chain Bi
- 60S ribosomal protein L36
Coloring options: