J6_7O81_001
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 7O81|1|B5|A|66, 7O81|1|B8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O81|1|B5|G|21
7O81|1|B5|G|22
7O81|1|B5|C|23
7O81|1|B5|G|24
7O81|1|B5|A|25
7O81|1|B5|C|26
*
7O81|1|B5|G|57
7O81|1|B5|G|58
7O81|1|B5|A|59
7O81|1|B5|A|60
7O81|1|B5|A|61
7O81|1|B5|A|62
7O81|1|B5|G|63
7O81|1|B5|A|64
7O81|1|B5|A|65
7O81|1|B5|A|66
7O81|1|B5|C|67
*
7O81|1|B5|G|74
7O81|1|B5|G|75
7O81|1|B5|A|76
7O81|1|B5|U|77
7O81|1|B5|U|78
*
7O81|1|B5|A|105
7O81|1|B5|A|106
7O81|1|B5|G|107
7O81|1|B5|A|108
7O81|1|B5|G|109
*
7O81|1|B5|C|332
7O81|1|B5|U|333
7O81|1|B5|A|334
7O81|1|B5|A|335
7O81|1|B5|A|336
7O81|1|B5|U|337
7O81|1|B5|A|338
7O81|1|B5|C|339
*
7O81|1|B8|G|33
7O81|1|B8|U|34
7O81|1|B8|C|35
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BL
- Ribosomal protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Bh
- uL29
- Chain Bi
- 60S ribosomal protein L36
- Chain Bj
- Ribosomal protein L37
Coloring options: