J6_7ODE_001

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

7ODE|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ODE|1|I|G|45
7ODE|1|I|G|46
*
7ODE|1|I|C|179
7ODE|1|I|G|180
7ODE|1|I|A|181
7ODE|1|I|A|182
7ODE|1|I|C|183
*
7ODE|1|I|G|214
7ODE|1|I|G|215
7ODE|1|I|A|216
7ODE|1|I|A|217
7ODE|1|I|A|218
7ODE|1|I|A|219
7ODE|1|I|G|220
7ODE|1|I|A|221
7ODE|1|I|A|222
7ODE|1|I|A|223
7ODE|1|I|U|224
*
7ODE|1|I|A|231
7ODE|1|I|G|232
7ODE|1|I|A|233
7ODE|1|I|U|234
7ODE|1|I|U|235
*
7ODE|1|I|A|262
7ODE|1|I|G|263
7ODE|1|I|C|264
7ODE|1|I|A|265
7ODE|1|I|G|266
*
7ODE|1|I|C|426
7ODE|1|I|U|427
7ODE|1|I|A|428
7ODE|1|I|A|429
7ODE|1|I|A|430
7ODE|1|I|U|431
7ODE|1|I|A|432
7ODE|1|I|C|433

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34