J6_7ODS_002
3D structure
- PDB id
- 7ODS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State B of the human mitoribosomal large subunit assembly intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 7ODS|1|A|U|2739, 7ODS|1|A|U|2895, 7ODS|1|A|G|2916, 7ODS|1|A|A|2918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ODS|1|A|U|2737
7ODS|1|A|U|2738
7ODS|1|A|U|2739
7ODS|1|A|A|2740
*
7ODS|1|A|U|2807
7ODS|1|A|U|2808
7ODS|1|A|C|2809
7ODS|1|A|G|2810
*
7ODS|1|A|C|2822
7ODS|1|A|U|2823
*
7ODS|1|A|A|2845
7ODS|1|A|G|2846
7ODS|1|A|C|2847
7ODS|1|A|A|2848
*
7ODS|1|A|U|2890
7ODS|1|A|C|2891
7ODS|1|A|A|2892
7ODS|1|A|A|2893
7ODS|1|A|U|2894
7ODS|1|A|U|2895
7ODS|1|A|G|2896
7ODS|1|A|A|2897
7ODS|1|A|U|2898
7ODS|1|A|C|2899
7ODS|1|A|C|2900
*
7ODS|1|A|G|2909
7ODS|1|A|A|2910
7ODS|1|A|C|2911
7ODS|1|A|C|2912
7ODS|1|A|A|2913
7ODS|1|A|A|2914
7ODS|1|A|C|2915
7ODS|1|A|G|2916
7ODS|1|A|G|2917
7ODS|1|A|A|2918
7ODS|1|A|A|2919
7ODS|1|A|C|2920
7ODS|1|A|A|2921
7ODS|1|A|A|2922
Current chains
- Chain A
- 16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA
Nearby chains
- Chain 1
- 39S ribosomal protein L33, mitochondrial
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain x
- 5-methylcytosine rRNA methyltransferase NSUN4
Coloring options: