Loop J6_7ODT

3D structure

PDB id: 7ODT (explore in PDB, NAKB, or RNA 3D Hub)
Description: State C of the human mitoribosomal large subunit assembly intermediate
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AGAUAG*CAA*UUAG*CACUA*UUGUAG*CACACCCAAU
Length: 34 nucleotides
Bulged bases: 7ODT|1|A|A|2097, 7ODT|1|A|C|2262
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7ODT|1|A|A|2027
7ODT|1|A|G|2028
7ODT|1|A|A|2029
7ODT|1|A|U|2030
7ODT|1|A|A|2031
7ODT|1|A|G|2032
*
7ODT|1|A|C|2043
7ODT|1|A|A|2044
7ODT|1|A|A|2045
*
7ODT|1|A|U|2095
7ODT|1|A|U|2096
7ODT|1|A|A|2097
7ODT|1|A|G|2098
*
7ODT|1|A|C|2123
7ODT|1|A|A|2124
7ODT|1|A|C|2125
7ODT|1|A|U|2126
7ODT|1|A|A|2127
*
7ODT|1|A|U|2138
7ODT|1|A|U|2139
7ODT|1|A|G|2140
7ODT|1|A|U|2141
7ODT|1|A|A|2142
7ODT|1|A|G|2143
*
7ODT|1|A|C|2257
7ODT|1|A|A|2258
7ODT|1|A|C|2259
7ODT|1|A|A|2260
7ODT|1|A|C|2261
7ODT|1|A|C|2262
7ODT|1|A|C|2263
7ODT|1|A|A|2264
7ODT|1|A|A|2265
7ODT|1|A|U|2266

Current chains

Chain A: 16S mitochondrial rRNA

Nearby chains

Chain 3: 39S ribosomal protein L35, mitochondrial
Chain I: 39S ribosomal protein L10, mitochondrial
Chain M: 39S ribosomal protein L15, mitochondrial
Chain N: 39S ribosomal protein L16, mitochondrial
Chain R: 39S ribosomal protein L20, mitochondrial
Chain S: 39S ribosomal protein L21, mitochondrial
Chain W: 39S ribosomal protein L27, mitochondrial
Chain Z: 39S ribosomal protein L30, mitochondrial
Chain i: 39S ribosomal protein L51, mitochondrial
Chain j: 39S ribosomal protein L52, mitochondrial
Chain o: Ribosomal protein 63, mitochondrial

J6_7ODT_001