Loop J6_7OHP

3D structure

PDB id: 7OHP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: CGAAGUUUCCCUCAGGAUAGC*GUGGG*CGAUGC*GAACG*CC*GAGUAG
Length: 45 nucleotides
Bulged bases: 7OHP|1|1|C|959, 7OHP|1|1|U|960, 7OHP|1|1|C|961
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OHP|1|1|C|949
7OHP|1|1|G|950
7OHP|1|1|A|951
7OHP|1|1|A|952
7OHP|1|1|G|953
7OHP|1|1|U|954
7OHP|1|1|U|955
7OHP|1|1|U|956
7OHP|1|1|C|957
7OHP|1|1|C|958
7OHP|1|1|C|959
7OHP|1|1|U|960
7OHP|1|1|C|961
7OHP|1|1|A|962
7OHP|1|1|G|963
7OHP|1|1|G|964
7OHP|1|1|A|965
7OHP|1|1|U|966
7OHP|1|1|A|967
7OHP|1|1|G|968
7OHP|1|1|C|969
*
7OHP|1|1|G|1113
7OHP|1|1|U|1114
7OHP|1|1|G|1115
7OHP|1|1|G|1116
7OHP|1|1|G|1117
*
7OHP|1|1|C|1141
7OHP|1|1|G|1142
7OHP|1|1|A|1143
7OHP|1|1|U|1144
7OHP|1|1|G|1145
7OHP|1|1|C|1146
*
7OHP|1|1|G|1157
7OHP|1|1|A|1158
7OHP|1|1|A|1159
7OHP|1|1|C|1160
7OHP|1|1|G|1161
*
7OHP|1|1|C|1338
7OHP|1|1|C|1339
*
7OHP|1|1|G|1365
7OHP|1|1|A|1366
7OHP|1|1|G|1367
7OHP|1|1|U|1368
7OHP|1|1|A|1369
7OHP|1|1|G|1370

Current chains

Chain 1: 25S rRNA

Nearby chains

Chain C: 60S ribosomal protein L4-A
Chain F: 60S ribosomal protein L7-A
Chain e: 60S ribosomal protein L32
Chain f: 60S ribosomal protein L33-A

J6_7OHP_002