Loop J6_7OIB

3D structure

PDB id: 7OIB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
Length: 39 nucleotides
Bulged bases: 7OIB|1|A|U|1069, 7OIB|1|A|G|1246, 7OIB|1|A|A|1248
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OIB|1|A|U|1067
7OIB|1|A|U|1068
7OIB|1|A|U|1069
7OIB|1|A|A|1070
*
7OIB|1|A|U|1137
7OIB|1|A|U|1138
7OIB|1|A|C|1139
7OIB|1|A|G|1140
*
7OIB|1|A|C|1152
7OIB|1|A|U|1153
*
7OIB|1|A|A|1175
7OIB|1|A|G|1176
7OIB|1|A|C|1177
7OIB|1|A|A|1178
*
7OIB|1|A|U|1220
7OIB|1|A|C|1221
7OIB|1|A|A|1222
7OIB|1|A|A|1223
7OIB|1|A|U|1224
7OIB|1|A|U|1225
7OIB|1|A|G|1226
7OIB|1|A|A|1227
7OIB|1|A|U|1228
7OIB|1|A|C|1229
7OIB|1|A|C|1230
*
7OIB|1|A|G|1239
7OIB|1|A|A|1240
7OIB|1|A|C|1241
7OIB|1|A|C|1242
7OIB|1|A|A|1243
7OIB|1|A|A|1244
7OIB|1|A|C|1245
7OIB|1|A|G|1246
7OIB|1|A|G|1247
7OIB|1|A|A|1248
7OIB|1|A|A|1249
7OIB|1|A|C|1250
7OIB|1|A|A|1251
7OIB|1|A|A|1252

Current chains

Chain A: 16S rRNA

Nearby chains

Chain 1: 39S ribosomal protein L33, mitochondrial
Chain 3: 39S ribosomal protein L35, mitochondrial
Chain M: 39S ribosomal protein L15, mitochondrial
Chain W: 39S ribosomal protein L27, mitochondrial
Chain X: 39S ribosomal protein L28, mitochondrial

J6_7OIB_002