3D structure

PDB id
7OIF (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
7OIF|1|1|U|2076, 7OIF|1|1|A|2388, 7OIF|1|1|U|2390, 7OIF|1|1|G|2428, 7OIF|1|1|A|2430, 7OIF|1|1|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OIF|1|1|U|2074
7OIF|1|1|U|2075
7OIF|1|1|U|2076
7OIF|1|1|A|2077
*
7OIF|1|1|U|2243
7OIF|1|1|U|2244
7OIF|1|1|U|2245
7OIF|1|1|G|2246
*
7OIF|1|1|C|2258
7OIF|1|1|U|2259
*
7OIF|1|1|A|2281
7OIF|1|1|G|2282
7OIF|1|1|C|2283
7OIF|1|1|A|2284
*
7OIF|1|1|U|2384
7OIF|1|1|C|2385
7OIF|1|1|A|2386
7OIF|1|1|U|2387
7OIF|1|1|A|2388
7OIF|1|1|G|2389
7OIF|1|1|U|2390
7OIF|1|1|G|2391
7OIF|1|1|A|2392
7OIF|1|1|U|2393
7OIF|1|1|C|2394
7OIF|1|1|C|2395
*
7OIF|1|1|G|2421
7OIF|1|1|C|2422
7OIF|1|1|U|2423
7OIF|1|1|C|2424
7OIF|1|1|A|2425
7OIF|1|1|A|2426
7OIF|1|1|C|2427
7OIF|1|1|G|2428
7OIF|1|1|G|2429
7OIF|1|1|A|2430
7OIF|1|1|U|2431
7OIF|1|1|A|2432
7OIF|1|1|A|2433
7OIF|1|1|A|2434
7OIF|1|1|A|2435

Current chains

Chain 1
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain K
50S ribosomal protein L15
Chain V
50S ribosomal protein L27
Chain W
50S ribosomal protein L28
Chain b
50S ribosomal protein L33
Chain d
50S ribosomal protein L35

Coloring options:

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