3D structure

PDB id
7OII (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
7OII|1|1|U|2076, 7OII|1|1|A|2388, 7OII|1|1|U|2390, 7OII|1|1|G|2428, 7OII|1|1|A|2430, 7OII|1|1|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OII|1|1|U|2074
7OII|1|1|U|2075
7OII|1|1|U|2076
7OII|1|1|A|2077
*
7OII|1|1|U|2243
7OII|1|1|U|2244
7OII|1|1|U|2245
7OII|1|1|G|2246
*
7OII|1|1|C|2258
7OII|1|1|U|2259
*
7OII|1|1|A|2281
7OII|1|1|G|2282
7OII|1|1|C|2283
7OII|1|1|A|2284
*
7OII|1|1|U|2384
7OII|1|1|C|2385
7OII|1|1|A|2386
7OII|1|1|U|2387
7OII|1|1|A|2388
7OII|1|1|G|2389
7OII|1|1|U|2390
7OII|1|1|G|2391
7OII|1|1|A|2392
7OII|1|1|U|2393
7OII|1|1|C|2394
7OII|1|1|C|2395
*
7OII|1|1|G|2421
7OII|1|1|C|2422
7OII|1|1|U|2423
7OII|1|1|C|2424
7OII|1|1|A|2425
7OII|1|1|A|2426
7OII|1|1|C|2427
7OII|1|1|G|2428
7OII|1|1|G|2429
7OII|1|1|A|2430
7OII|1|1|U|2431
7OII|1|1|A|2432
7OII|1|1|A|2433
7OII|1|1|A|2434
7OII|1|1|A|2435

Current chains

Chain 1
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain K
50S ribosomal protein L15
Chain V
50S ribosomal protein L27
Chain W
50S ribosomal protein L28
Chain b
50S ribosomal protein L33
Chain d
50S ribosomal protein L35

Coloring options:

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