J6_7OPE_002
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 7OPE|1|A|U|2105, 7OPE|1|A|U|2419, 7OPE|1|A|G|2457, 7OPE|1|A|A|2459, 7OPE|1|A|U|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OPE|1|A|U|2103
7OPE|1|A|U|2104
7OPE|1|A|U|2105
7OPE|1|A|A|2106
*
7OPE|1|A|U|2272
7OPE|1|A|U|2273
7OPE|1|A|U|2274
7OPE|1|A|G|2275
*
7OPE|1|A|C|2287
7OPE|1|A|G|2288
*
7OPE|1|A|C|2310
7OPE|1|A|G|2311
7OPE|1|A|C|2312
7OPE|1|A|C|2313
*
7OPE|1|A|G|2413
7OPE|1|A|C|2414
7OPE|1|A|U|2415
7OPE|1|A|U|2416
7OPE|1|A|A|2417
7OPE|1|A|G|2418
7OPE|1|A|U|2419
7OPE|1|A|G|2420
7OPE|1|A|A|2421
7OPE|1|A|U|2422
7OPE|1|A|C|2423
7OPE|1|A|C|2424
*
7OPE|1|A|G|2450
7OPE|1|A|C|2451
7OPE|1|A|U|2452
7OPE|1|A|C|2453
7OPE|1|A|A|2454
7OPE|1|A|A|2455
7OPE|1|A|C|2456
7OPE|1|A|G|2457
7OPE|1|A|G|2458
7OPE|1|A|A|2459
7OPE|1|A|U|2460
7OPE|1|A|A|2461
7OPE|1|A|A|2462
7OPE|1|A|A|2463
7OPE|1|A|A|2464
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L2
- Chain P
- 50S ribosomal protein L15
- Chain a
- 50S ribosomal protein L27
- Chain b
- 50S ribosomal protein L28
- Chain g
- 50S ribosomal protein L33 1
- Chain i
- 50S ribosomal protein L35
Coloring options: