J6_7OTC_001

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

7OTC|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OTC|1|A|G|45
7OTC|1|A|G|46
*
7OTC|1|A|C|179
7OTC|1|A|G|180
7OTC|1|A|A|181
7OTC|1|A|A|182
7OTC|1|A|C|183
*
7OTC|1|A|G|214
7OTC|1|A|G|215
7OTC|1|A|A|216
7OTC|1|A|A|217
7OTC|1|A|A|218
7OTC|1|A|A|219
7OTC|1|A|G|220
7OTC|1|A|A|221
7OTC|1|A|A|222
7OTC|1|A|A|223
7OTC|1|A|U|224
*
7OTC|1|A|A|231
7OTC|1|A|G|232
7OTC|1|A|A|233
7OTC|1|A|U|234
7OTC|1|A|U|235
*
7OTC|1|A|A|262
7OTC|1|A|G|263
7OTC|1|A|C|264
7OTC|1|A|A|265
7OTC|1|A|G|266
*
7OTC|1|A|C|426
7OTC|1|A|U|427
7OTC|1|A|A|428
7OTC|1|A|A|429
7OTC|1|A|A|430
7OTC|1|A|U|431
7OTC|1|A|A|432
7OTC|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34