J6_7PWG_001
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGCGAC*GGAGGAGAAAC*GGAUU*AGGAG*CUAAAUAC*GGC
- Length
- 38 nucleotides
- Bulged bases
- 7PWG|1|1|G|24, 7PWG|1|1|A|66, 7PWG|1|4|G|35
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PWG|1|1|G|21
7PWG|1|1|G|22
7PWG|1|1|C|23
7PWG|1|1|G|24
7PWG|1|1|A|25
7PWG|1|1|C|26
*
7PWG|1|1|G|57
7PWG|1|1|G|58
7PWG|1|1|A|59
7PWG|1|1|G|60
7PWG|1|1|G|61
7PWG|1|1|A|62
7PWG|1|1|G|63
7PWG|1|1|A|64
7PWG|1|1|A|65
7PWG|1|1|A|66
7PWG|1|1|C|67
*
7PWG|1|1|G|74
7PWG|1|1|G|75
7PWG|1|1|A|76
7PWG|1|1|U|77
7PWG|1|1|U|78
*
7PWG|1|1|A|103
7PWG|1|1|G|104
7PWG|1|1|G|105
7PWG|1|1|A|106
7PWG|1|1|G|107
*
7PWG|1|1|C|272
7PWG|1|1|U|273
7PWG|1|1|A|274
7PWG|1|1|A|275
7PWG|1|1|A|276
7PWG|1|1|U|277
7PWG|1|1|A|278
7PWG|1|1|C|279
*
7PWG|1|4|G|34
7PWG|1|4|G|35
7PWG|1|4|C|36
Current chains
- Chain 1
- rRNA 28S
- Chain 4
- rRNA 5.8S
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain h
- Ribosomal protein L29
- Chain i
- Ribosomal protein L36-1
- Chain j
- Ribosomal protein L37
Coloring options: