J6_7RQ9_001

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

7RQ9|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQ9|1|1A|G|44
7RQ9|1|1A|C|45
*
7RQ9|1|1A|G|179
7RQ9|1|1A|G|180
7RQ9|1|1A|A|181
7RQ9|1|1A|A|182
7RQ9|1|1A|C|183
*
7RQ9|1|1A|G|214
7RQ9|1|1A|G|215
7RQ9|1|1A|A|216
7RQ9|1|1A|G|217
7RQ9|1|1A|A|218
7RQ9|1|1A|G|219
7RQ9|1|1A|G|220
7RQ9|1|1A|A|221
7RQ9|1|1A|A|222
7RQ9|1|1A|A|223
7RQ9|1|1A|G|224
*
7RQ9|1|1A|C|231
7RQ9|1|1A|G|232
7RQ9|1|1A|A|233
7RQ9|1|1A|C|234
7RQ9|1|1A|U|235
*
7RQ9|1|1A|A|262
7RQ9|1|1A|C|263
7RQ9|1|1A|C|264
7RQ9|1|1A|A|265
7RQ9|1|1A|G|266
*
7RQ9|1|1A|C|426
7RQ9|1|1A|U|427
7RQ9|1|1A|A|428
7RQ9|1|1A|A|429
7RQ9|1|1A|G|430
7RQ9|1|1A|U|431
7RQ9|1|1A|A|432
7RQ9|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34