J6_7RQD_003

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

7RQD|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQD|1|2A|G|44
7RQD|1|2A|C|45
*
7RQD|1|2A|G|179
7RQD|1|2A|G|180
7RQD|1|2A|A|181
7RQD|1|2A|A|182
7RQD|1|2A|C|183
*
7RQD|1|2A|G|214
7RQD|1|2A|G|215
7RQD|1|2A|A|216
7RQD|1|2A|G|217
7RQD|1|2A|A|218
7RQD|1|2A|G|219
7RQD|1|2A|G|220
7RQD|1|2A|A|221
7RQD|1|2A|A|222
7RQD|1|2A|A|223
7RQD|1|2A|G|224
*
7RQD|1|2A|C|231
7RQD|1|2A|G|232
7RQD|1|2A|A|233
7RQD|1|2A|C|234
7RQD|1|2A|U|235
*
7RQD|1|2A|A|262
7RQD|1|2A|C|263
7RQD|1|2A|C|264
7RQD|1|2A|A|265
7RQD|1|2A|G|266
*
7RQD|1|2A|C|426
7RQD|1|2A|U|427
7RQD|1|2A|A|428
7RQD|1|2A|A|429
7RQD|1|2A|G|430
7RQD|1|2A|U|431
7RQD|1|2A|A|432
7RQD|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34