J6_7RQE_003

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

7RQE|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQE|1|2A|G|44
7RQE|1|2A|C|45
*
7RQE|1|2A|G|179
7RQE|1|2A|G|180
7RQE|1|2A|A|181
7RQE|1|2A|A|182
7RQE|1|2A|C|183
*
7RQE|1|2A|G|214
7RQE|1|2A|G|215
7RQE|1|2A|A|216
7RQE|1|2A|G|217
7RQE|1|2A|A|218
7RQE|1|2A|G|219
7RQE|1|2A|G|220
7RQE|1|2A|A|221
7RQE|1|2A|A|222
7RQE|1|2A|A|223
7RQE|1|2A|G|224
*
7RQE|1|2A|C|231
7RQE|1|2A|G|232
7RQE|1|2A|A|233
7RQE|1|2A|C|234
7RQE|1|2A|U|235
*
7RQE|1|2A|A|262
7RQE|1|2A|C|263
7RQE|1|2A|C|264
7RQE|1|2A|A|265
7RQE|1|2A|G|266
*
7RQE|1|2A|C|426
7RQE|1|2A|U|427
7RQE|1|2A|A|428
7RQE|1|2A|A|429
7RQE|1|2A|G|430
7RQE|1|2A|U|431
7RQE|1|2A|A|432
7RQE|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34