Loop J6_7RR5

3D structure

PDB id: 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 7RR5|1|C1|A|67, 7RR5|1|C1|U|329, 7RR5|1|C3|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7RR5|1|C1|G|22
7RR5|1|C1|A|23
7RR5|1|C1|G|24
7RR5|1|C1|U|25
7RR5|1|C1|A|26
7RR5|1|C1|C|27
*
7RR5|1|C1|G|58
7RR5|1|C1|G|59
7RR5|1|C1|A|60
7RR5|1|C1|A|61
7RR5|1|C1|A|62
7RR5|1|C1|A|63
7RR5|1|C1|G|64
7RR5|1|C1|A|65
7RR5|1|C1|A|66
7RR5|1|C1|A|67
7RR5|1|C1|C|68
*
7RR5|1|C1|G|75
7RR5|1|C1|G|76
7RR5|1|C1|A|77
7RR5|1|C1|U|78
7RR5|1|C1|U|79
*
7RR5|1|C1|A|106
7RR5|1|C1|A|107
7RR5|1|C1|A|108
7RR5|1|C1|A|109
7RR5|1|C1|G|110
*
7RR5|1|C1|C|321
7RR5|1|C1|U|322
7RR5|1|C1|A|323
7RR5|1|C1|A|324
7RR5|1|C1|A|325
7RR5|1|C1|U|326
7RR5|1|C1|A|327
7RR5|1|C1|U|328
7RR5|1|C1|U|329
7RR5|1|C1|G|330
7RR5|1|C1|G|331
*
7RR5|1|C3|C|32
7RR5|1|C3|A|33
7RR5|1|C3|U|34
7RR5|1|C3|C|35

Current chains

Chain C1: 25S rRNA
Chain C3: 5.8S rRNA

Nearby chains

Chain LC: RPL4A isoform 1
Chain LL: 60S ribosomal protein L13
Chain LN: 60S ribosomal protein L15-A
Chain Lh: 60S ribosomal protein L35-A
Chain Li: 60S ribosomal protein L36-A
Chain Lj: Ribosomal protein L37

J6_7RR5_001