Loop J6_7SFR

3D structure

PDB id: 7SFR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Unmethylated Mtb Ribosome 50S with SEQ-9
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Loop

Sequence: UUCA*UUUA*UG*CGCC*GAUUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 7SFR|1|A|C|2313, 7SFR|1|A|U|2628, 7SFR|1|A|G|2666, 7SFR|1|A|A|2668, 7SFR|1|A|U|2669
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7SFR|1|A|U|2311
7SFR|1|A|U|2312
7SFR|1|A|C|2313
7SFR|1|A|A|2314
*
7SFR|1|A|U|2481
7SFR|1|A|U|2482
7SFR|1|A|U|2483
7SFR|1|A|A|2484
*
7SFR|1|A|U|2496
7SFR|1|A|G|2497
*
7SFR|1|A|C|2519
7SFR|1|A|G|2520
7SFR|1|A|C|2521
7SFR|1|A|C|2522
*
7SFR|1|A|G|2622
7SFR|1|A|A|2623
7SFR|1|A|U|2624
7SFR|1|A|U|2625
7SFR|1|A|A|2626
7SFR|1|A|G|2627
7SFR|1|A|U|2628
7SFR|1|A|G|2629
7SFR|1|A|A|2630
7SFR|1|A|U|2631
7SFR|1|A|C|2632
7SFR|1|A|C|2633
*
7SFR|1|A|G|2659
7SFR|1|A|C|2660
7SFR|1|A|U|2661
7SFR|1|A|C|2662
7SFR|1|A|A|2663
7SFR|1|A|A|2664
7SFR|1|A|C|2665
7SFR|1|A|G|2666
7SFR|1|A|G|2667
7SFR|1|A|A|2668
7SFR|1|A|U|2669
7SFR|1|A|A|2670
7SFR|1|A|A|2671
7SFR|1|A|A|2672
7SFR|1|A|A|2673

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 1: 50S ribosomal protein L33
Chain 3: 50S ribosomal protein L35
Chain C: 50S ribosomal protein L2
Chain L: 50S ribosomal protein L15
Chain W: 50S ribosomal protein L27
Chain X: 50S ribosomal protein L28

J6_7SFR_002