J6_7TM3_003

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

7TM3|1|K|G|3922, 7TM3|1|K|A|4376, 7TM3|1|K|A|4378, 7TM3|1|K|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|U|3920
7TM3|1|K|U|3921
7TM3|1|K|G|3922
7TM3|1|K|A|3923
*
7TM3|1|K|U|4188
7TM3|1|K|U|4189
7TM3|1|K|U|4190
7TM3|1|K|G|4191
*
7TM3|1|K|C|4204
7TM3|1|K|A|4205
*
7TM3|1|K|U|4227
7TM3|1|K|G|4228
7TM3|1|K|U|4229
7TM3|1|K|C|4230
*
7TM3|1|K|G|4331
7TM3|1|K|C|4332
7TM3|1|K|C|4333
7TM3|1|K|U|4334
7TM3|1|K|C|4335
7TM3|1|K|A|4336
7TM3|1|K|C|4337
7TM3|1|K|G|4338
7TM3|1|K|A|4339
7TM3|1|K|U|4340
7TM3|1|K|C|4341
7TM3|1|K|C|4342
*
7TM3|1|K|G|4370
7TM3|1|K|G|4371
7TM3|1|K|U|4372
7TM3|1|K|G|4373
7TM3|1|K|U|4374
7TM3|1|K|C|4375
7TM3|1|K|A|4376
7TM3|1|K|G|4377
7TM3|1|K|A|4378
7TM3|1|K|A|4379
7TM3|1|K|A|4380
7TM3|1|K|A|4381

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain Q

eL18

Chain T

eL21

Chain a

60S ribosomal protein L27a

Chain b

eL29

Chain o

eL42

Chain q

Transfer RNA; tRNA