J6_7TOO_001
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 7TOO|1|A25S|A|67, 7TOO|1|A25S|U|329, 7TOO|1|A58S|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOO|1|A25S|G|22
7TOO|1|A25S|A|23
7TOO|1|A25S|G|24
7TOO|1|A25S|U|25
7TOO|1|A25S|A|26
7TOO|1|A25S|C|27
*
7TOO|1|A25S|G|58
7TOO|1|A25S|G|59
7TOO|1|A25S|A|60
7TOO|1|A25S|A|61
7TOO|1|A25S|A|62
7TOO|1|A25S|A|63
7TOO|1|A25S|G|64
7TOO|1|A25S|A|65
7TOO|1|A25S|A|66
7TOO|1|A25S|A|67
7TOO|1|A25S|C|68
*
7TOO|1|A25S|G|75
7TOO|1|A25S|G|76
7TOO|1|A25S|A|77
7TOO|1|A25S|U|78
7TOO|1|A25S|U|79
*
7TOO|1|A25S|A|106
7TOO|1|A25S|A|107
7TOO|1|A25S|A|108
7TOO|1|A25S|A|109
7TOO|1|A25S|G|110
*
7TOO|1|A25S|C|321
7TOO|1|A25S|U|322
7TOO|1|A25S|A|323
7TOO|1|A25S|A|324
7TOO|1|A25S|A|325
7TOO|1|A25S|U|326
7TOO|1|A25S|A|327
7TOO|1|A25S|U|328
7TOO|1|A25S|U|329
7TOO|1|A25S|G|330
7TOO|1|A25S|G|331
*
7TOO|1|A58S|C|32
7TOO|1|A58S|A|33
7TOO|1|A58S|U|34
7TOO|1|A58S|C|35
Current chains
- Chain A25S
- 25S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL36
- 60S ribosomal protein L36-A
- Chain AL37
- 60S ribosomal protein L37-A
Coloring options: