3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
7TOO|1|A25S|A|67, 7TOO|1|A25S|U|329, 7TOO|1|A58S|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7TOO|1|A25S|G|22
7TOO|1|A25S|A|23
7TOO|1|A25S|G|24
7TOO|1|A25S|U|25
7TOO|1|A25S|A|26
7TOO|1|A25S|C|27
*
7TOO|1|A25S|G|58
7TOO|1|A25S|G|59
7TOO|1|A25S|A|60
7TOO|1|A25S|A|61
7TOO|1|A25S|A|62
7TOO|1|A25S|A|63
7TOO|1|A25S|G|64
7TOO|1|A25S|A|65
7TOO|1|A25S|A|66
7TOO|1|A25S|A|67
7TOO|1|A25S|C|68
*
7TOO|1|A25S|G|75
7TOO|1|A25S|G|76
7TOO|1|A25S|A|77
7TOO|1|A25S|U|78
7TOO|1|A25S|U|79
*
7TOO|1|A25S|A|106
7TOO|1|A25S|A|107
7TOO|1|A25S|A|108
7TOO|1|A25S|A|109
7TOO|1|A25S|G|110
*
7TOO|1|A25S|C|321
7TOO|1|A25S|U|322
7TOO|1|A25S|A|323
7TOO|1|A25S|A|324
7TOO|1|A25S|A|325
7TOO|1|A25S|U|326
7TOO|1|A25S|A|327
7TOO|1|A25S|U|328
7TOO|1|A25S|U|329
7TOO|1|A25S|G|330
7TOO|1|A25S|G|331
*
7TOO|1|A58S|C|32
7TOO|1|A58S|A|33
7TOO|1|A58S|U|34
7TOO|1|A58S|C|35

Current chains

Chain A25S
25S rRNA
Chain A58S
5.8S rRNA

Nearby chains

Chain AL04
RPL4A isoform 1
Chain AL13
60S ribosomal protein L13-A
Chain AL15
60S ribosomal protein L15-A
Chain AL35
60S ribosomal protein L35-A
Chain AL36
60S ribosomal protein L36-A
Chain AL37
60S ribosomal protein L37-A

Coloring options:

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