J6_7TOP_001
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 7TOP|1|A25S|A|67, 7TOP|1|A25S|U|329, 7TOP|1|A58S|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOP|1|A25S|G|22
7TOP|1|A25S|A|23
7TOP|1|A25S|G|24
7TOP|1|A25S|U|25
7TOP|1|A25S|A|26
7TOP|1|A25S|C|27
*
7TOP|1|A25S|G|58
7TOP|1|A25S|G|59
7TOP|1|A25S|A|60
7TOP|1|A25S|A|61
7TOP|1|A25S|A|62
7TOP|1|A25S|A|63
7TOP|1|A25S|G|64
7TOP|1|A25S|A|65
7TOP|1|A25S|A|66
7TOP|1|A25S|A|67
7TOP|1|A25S|C|68
*
7TOP|1|A25S|G|75
7TOP|1|A25S|G|76
7TOP|1|A25S|A|77
7TOP|1|A25S|U|78
7TOP|1|A25S|U|79
*
7TOP|1|A25S|A|106
7TOP|1|A25S|A|107
7TOP|1|A25S|A|108
7TOP|1|A25S|A|109
7TOP|1|A25S|G|110
*
7TOP|1|A25S|C|321
7TOP|1|A25S|U|322
7TOP|1|A25S|A|323
7TOP|1|A25S|A|324
7TOP|1|A25S|A|325
7TOP|1|A25S|U|326
7TOP|1|A25S|A|327
7TOP|1|A25S|U|328
7TOP|1|A25S|U|329
7TOP|1|A25S|G|330
7TOP|1|A25S|G|331
*
7TOP|1|A58S|C|32
7TOP|1|A58S|A|33
7TOP|1|A58S|U|34
7TOP|1|A58S|C|35
Current chains
- Chain A25S
- 25S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL36
- 60S ribosomal protein L36-A
- Chain AL37
- 60S ribosomal protein L37-A
Coloring options: