J6_7TOR_002

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

7TOR|1|A28S|C|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|C|1352
7TOR|1|A28S|G|1353
7TOR|1|A28S|A|1354
7TOR|1|A28S|G|1355
*
7TOR|1|A28S|C|1384
7TOR|1|A28S|G|1385
7TOR|1|A28S|C|1386
7TOR|1|A28S|A|1387
7TOR|1|A28S|A|1388
*
7TOR|1|A28S|U|1395
7TOR|1|A28S|G|1396
7TOR|1|A28S|A|1397
7TOR|1|A28S|A|1398
7TOR|1|A28S|G|1399
*
7TOR|1|A28S|C|1418
7TOR|1|A28S|G|1419
7TOR|1|A28S|A|1420
7TOR|1|A28S|G|1421
*
7TOR|1|A28S|C|1464
7TOR|1|A28S|G|1465
7TOR|1|A28S|G|1466
*
7TOR|1|A28S|C|1499
7TOR|1|A28S|A|1500
7TOR|1|A28S|C|1501
7TOR|1|A28S|G|1502
7TOR|1|A28S|A|1503
7TOR|1|A28S|G|1504

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL13

60S ribosomal protein L13

Chain AL18

eL18

Chain AL28

60S ribosomal protein L27a

Chain AL29

eL29

Chain AL36

60S ribosomal protein L36