J6_7TOR_003
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7TOR|1|A28S|G|3922, 7TOR|1|A28S|A|4376, 7TOR|1|A28S|A|4378, 7TOR|1|A28S|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOR|1|A28S|U|3920
7TOR|1|A28S|U|3921
7TOR|1|A28S|G|3922
7TOR|1|A28S|A|3923
*
7TOR|1|A28S|U|4188
7TOR|1|A28S|U|4189
7TOR|1|A28S|U|4190
7TOR|1|A28S|G|4191
*
7TOR|1|A28S|C|4204
7TOR|1|A28S|A|4205
*
7TOR|1|A28S|U|4227
7TOR|1|A28S|G|4228
7TOR|1|A28S|U|4229
7TOR|1|A28S|C|4230
*
7TOR|1|A28S|G|4331
7TOR|1|A28S|C|4332
7TOR|1|A28S|C|4333
7TOR|1|A28S|U|4334
7TOR|1|A28S|C|4335
7TOR|1|A28S|A|4336
7TOR|1|A28S|C|4337
7TOR|1|A28S|G|4338
7TOR|1|A28S|A|4339
7TOR|1|A28S|U|4340
7TOR|1|A28S|C|4341
7TOR|1|A28S|C|4342
*
7TOR|1|A28S|G|4370
7TOR|1|A28S|G|4371
7TOR|1|A28S|U|4372
7TOR|1|A28S|G|4373
7TOR|1|A28S|U|4374
7TOR|1|A28S|C|4375
7TOR|1|A28S|A|4376
7TOR|1|A28S|G|4377
7TOR|1|A28S|A|4378
7TOR|1|A28S|A|4379
7TOR|1|A28S|A|4380
7TOR|1|A28S|A|4381
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL15
- 60S ribosomal protein L15
- Chain AL18
- eL18
- Chain AL21
- 60S ribosomal protein L21
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL29
- eL29
- Chain AL42
- eL42
- Chain ETRN
- Transfer RNA; tRNA
Coloring options: