J6_7U0H_001

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

7U0H|1|1|A|67, 7U0H|1|1|U|329, 7U0H|1|2|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7U0H|1|1|G|22
7U0H|1|1|A|23
7U0H|1|1|G|24
7U0H|1|1|U|25
7U0H|1|1|A|26
7U0H|1|1|C|27
*
7U0H|1|1|G|58
7U0H|1|1|G|59
7U0H|1|1|A|60
7U0H|1|1|A|61
7U0H|1|1|A|62
7U0H|1|1|A|63
7U0H|1|1|G|64
7U0H|1|1|A|65
7U0H|1|1|A|66
7U0H|1|1|A|67
7U0H|1|1|C|68
*
7U0H|1|1|G|75
7U0H|1|1|G|76
7U0H|1|1|A|77
7U0H|1|1|U|78
7U0H|1|1|U|79
*
7U0H|1|1|A|106
7U0H|1|1|A|107
7U0H|1|1|A|108
7U0H|1|1|A|109
7U0H|1|1|G|110
*
7U0H|1|1|C|321
7U0H|1|1|U|322
7U0H|1|1|A|323
7U0H|1|1|A|324
7U0H|1|1|A|325
7U0H|1|1|U|326
7U0H|1|1|A|327
7U0H|1|1|U|328
7U0H|1|1|U|329
7U0H|1|1|G|330
7U0H|1|1|G|331
*
7U0H|1|2|C|32
7U0H|1|2|A|33
7U0H|1|2|U|34
7U0H|1|2|C|35

Current chains

Chain 1

25S rRNA

Chain 2

5.8S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A

Chain i

60S ribosomal protein L36-A

Chain j

60S ribosomal protein L37-A