J6_7UQB_001
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 7UQB|1|1|A|67, 7UQB|1|1|U|329, 7UQB|1|2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UQB|1|1|G|22
7UQB|1|1|A|23
7UQB|1|1|G|24
7UQB|1|1|U|25
7UQB|1|1|A|26
7UQB|1|1|C|27
*
7UQB|1|1|G|58
7UQB|1|1|G|59
7UQB|1|1|A|60
7UQB|1|1|A|61
7UQB|1|1|A|62
7UQB|1|1|A|63
7UQB|1|1|G|64
7UQB|1|1|A|65
7UQB|1|1|A|66
7UQB|1|1|A|67
7UQB|1|1|C|68
*
7UQB|1|1|G|75
7UQB|1|1|G|76
7UQB|1|1|A|77
7UQB|1|1|U|78
7UQB|1|1|U|79
*
7UQB|1|1|A|106
7UQB|1|1|A|107
7UQB|1|1|A|108
7UQB|1|1|A|109
7UQB|1|1|G|110
*
7UQB|1|1|C|321
7UQB|1|1|U|322
7UQB|1|1|A|323
7UQB|1|1|A|324
7UQB|1|1|A|325
7UQB|1|1|U|326
7UQB|1|1|A|327
7UQB|1|1|U|328
7UQB|1|1|U|329
7UQB|1|1|G|330
7UQB|1|1|G|331
*
7UQB|1|2|C|32
7UQB|1|2|A|33
7UQB|1|2|U|34
7UQB|1|2|C|35
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: