Loop J6_7UQB

3D structure

PDB id: 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.43 Å

Loop

Sequence: GAC(PSU)G*CAUAG*UGAUU(PSU)CUG*CG*CUUAAGGUAGC(5MC)*GGAUUAAC
Length: 41 nucleotides
Bulged bases: 7UQB|1|1|U|2193, 7UQB|1|1|U|2268, 7UQB|1|1|U|2269, 7UQB|1|1|G|2272, 7UQB|1|1|G|2273, 7UQB|1|1|U|2274, 7UQB|1|1|A|2275, 7UQB|1|1|G|2316, 7UQB|1|1|U|2318
QA status: Modified nucleotides: PSU, 5MC

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7UQB|1|1|G|2130
7UQB|1|1|A|2131
7UQB|1|1|C|2132
7UQB|1|1|PSU|2133
7UQB|1|1|G|2134
*
7UQB|1|1|C|2146
7UQB|1|1|A|2147
7UQB|1|1|U|2148
7UQB|1|1|A|2149
7UQB|1|1|G|2150
*
7UQB|1|1|U|2186
7UQB|1|1|G|2187
7UQB|1|1|A|2188
7UQB|1|1|U|2189
7UQB|1|1|U|2190
7UQB|1|1|PSU|2191
7UQB|1|1|C|2192
7UQB|1|1|U|2193
7UQB|1|1|G|2194
*
7UQB|1|1|C|2248
7UQB|1|1|G|2249
*
7UQB|1|1|C|2267
7UQB|1|1|U|2268
7UQB|1|1|U|2269
7UQB|1|1|A|2270
7UQB|1|1|A|2271
7UQB|1|1|G|2272
7UQB|1|1|G|2273
7UQB|1|1|U|2274
7UQB|1|1|A|2275
7UQB|1|1|G|2276
7UQB|1|1|C|2277
7UQB|1|1|5MC|2278
*
7UQB|1|1|G|2315
7UQB|1|1|G|2316
7UQB|1|1|A|2317
7UQB|1|1|U|2318
7UQB|1|1|U|2319
7UQB|1|1|A|2320
7UQB|1|1|A|2321
7UQB|1|1|C|2322

Current chains

Chain 1: 25S rRNA

Nearby chains

Chain A: 60S ribosomal protein L2-A
Chain m: Nucleolar GTP-binding protein 2
Chain p: 60S ribosomal protein L43-A
Chain v: Ribosome production factor 2 homolog

J6_7UQB_002