J6_7V08_002
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- GAC(PSU)G*CAUAG*UGAUU(PSU)CUGC*GCG*CUUAAGGUAGC(5MC)*GGAUUAAC
- Length
- 43 nucleotides
- Bulged bases
- 7V08|1|1|U|2193, 7V08|1|1|U|2268, 7V08|1|1|U|2269, 7V08|1|1|G|2272, 7V08|1|1|G|2273, 7V08|1|1|U|2274, 7V08|1|1|A|2275, 7V08|1|1|G|2316, 7V08|1|1|U|2318
- QA status
- Modified nucleotides: PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7V08|1|1|G|2130
7V08|1|1|A|2131
7V08|1|1|C|2132
7V08|1|1|PSU|2133
7V08|1|1|G|2134
*
7V08|1|1|C|2146
7V08|1|1|A|2147
7V08|1|1|U|2148
7V08|1|1|A|2149
7V08|1|1|G|2150
*
7V08|1|1|U|2186
7V08|1|1|G|2187
7V08|1|1|A|2188
7V08|1|1|U|2189
7V08|1|1|U|2190
7V08|1|1|PSU|2191
7V08|1|1|C|2192
7V08|1|1|U|2193
7V08|1|1|G|2194
7V08|1|1|C|2195
*
7V08|1|1|G|2247
7V08|1|1|C|2248
7V08|1|1|G|2249
*
7V08|1|1|C|2267
7V08|1|1|U|2268
7V08|1|1|U|2269
7V08|1|1|A|2270
7V08|1|1|A|2271
7V08|1|1|G|2272
7V08|1|1|G|2273
7V08|1|1|U|2274
7V08|1|1|A|2275
7V08|1|1|G|2276
7V08|1|1|C|2277
7V08|1|1|5MC|2278
*
7V08|1|1|G|2315
7V08|1|1|G|2316
7V08|1|1|A|2317
7V08|1|1|U|2318
7V08|1|1|U|2319
7V08|1|1|A|2320
7V08|1|1|A|2321
7V08|1|1|C|2322
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain p
- 60S ribosomal protein L43-A
- Chain v
- Ribosome production factor 2 homolog
Coloring options: