J6_7XAM_001

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

7XAM|1|A|A|222, 7XAM|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XAM|1|A|G|42
7XAM|1|A|C|43
*
7XAM|1|A|G|178
7XAM|1|A|G|179
7XAM|1|A|A|180
7XAM|1|A|A|181
7XAM|1|A|C|182
*
7XAM|1|A|G|213
7XAM|1|A|G|214
7XAM|1|A|A|215
7XAM|1|A|A|216
7XAM|1|A|G|217
7XAM|1|A|A|218
7XAM|1|A|G|219
7XAM|1|A|A|220
7XAM|1|A|A|221
7XAM|1|A|A|222
7XAM|1|A|A|223
*
7XAM|1|A|U|231
7XAM|1|A|G|232
7XAM|1|A|A|233
7XAM|1|A|U|234
7XAM|1|A|U|235
*
7XAM|1|A|A|262
7XAM|1|A|G|263
7XAM|1|A|G|264
7XAM|1|A|A|265
7XAM|1|A|U|266
7XAM|1|A|G|267
*
7XAM|1|A|C|514
7XAM|1|A|U|515
7XAM|1|A|G|516
7XAM|1|A|A|517
7XAM|1|A|A|518
7XAM|1|A|U|519
7XAM|1|A|A|520
7XAM|1|A|C|521

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34