J6_7XNX_003
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGA*UUUG*CA*(OMU)(OMG)UC*GCCU(5MC)ACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 7XNX|1|L1|G|3922, 7XNX|1|L1|C|4337, 7XNX|1|L1|A|4376, 7XNX|1|L1|A|4378, 7XNX|1|L1|A|4379
- QA status
- Modified nucleotides: OMU, OMG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7XNX|1|L1|U|3920
7XNX|1|L1|U|3921
7XNX|1|L1|G|3922
7XNX|1|L1|A|3923
*
7XNX|1|L1|U|4188
7XNX|1|L1|U|4189
7XNX|1|L1|U|4190
7XNX|1|L1|G|4191
*
7XNX|1|L1|C|4204
7XNX|1|L1|A|4205
*
7XNX|1|L1|OMU|4227
7XNX|1|L1|OMG|4228
7XNX|1|L1|U|4229
7XNX|1|L1|C|4230
*
7XNX|1|L1|G|4331
7XNX|1|L1|C|4332
7XNX|1|L1|C|4333
7XNX|1|L1|U|4334
7XNX|1|L1|5MC|4335
7XNX|1|L1|A|4336
7XNX|1|L1|C|4337
7XNX|1|L1|G|4338
7XNX|1|L1|A|4339
7XNX|1|L1|U|4340
7XNX|1|L1|C|4341
7XNX|1|L1|C|4342
*
7XNX|1|L1|OMG|4370
7XNX|1|L1|G|4371
7XNX|1|L1|U|4372
7XNX|1|L1|G|4373
7XNX|1|L1|U|4374
7XNX|1|L1|C|4375
7XNX|1|L1|A|4376
7XNX|1|L1|G|4377
7XNX|1|L1|A|4378
7XNX|1|L1|A|4379
7XNX|1|L1|A|4380
7XNX|1|L1|A|4381
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
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