J6_7Y41_001

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

7Y41|1|A|A|222, 7Y41|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Y41|1|A|G|42
7Y41|1|A|C|43
*
7Y41|1|A|G|178
7Y41|1|A|G|179
7Y41|1|A|A|180
7Y41|1|A|A|181
7Y41|1|A|C|182
*
7Y41|1|A|G|213
7Y41|1|A|G|214
7Y41|1|A|A|215
7Y41|1|A|A|216
7Y41|1|A|G|217
7Y41|1|A|A|218
7Y41|1|A|G|219
7Y41|1|A|A|220
7Y41|1|A|A|221
7Y41|1|A|A|222
7Y41|1|A|A|223
*
7Y41|1|A|U|231
7Y41|1|A|G|232
7Y41|1|A|A|233
7Y41|1|A|U|234
7Y41|1|A|U|235
*
7Y41|1|A|A|262
7Y41|1|A|G|263
7Y41|1|A|G|264
7Y41|1|A|A|265
7Y41|1|A|U|266
7Y41|1|A|G|267
*
7Y41|1|A|C|514
7Y41|1|A|U|515
7Y41|1|A|G|516
7Y41|1|A|A|517
7Y41|1|A|A|518
7Y41|1|A|U|519
7Y41|1|A|A|520
7Y41|1|A|C|521

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34