J6_7ZOD_002
3D structure
- PDB id
- 7ZOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 7ZOD|1|b|U|2076, 7ZOD|1|b|A|2388, 7ZOD|1|b|U|2390, 7ZOD|1|b|G|2428, 7ZOD|1|b|A|2430, 7ZOD|1|b|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZOD|1|b|U|2074
7ZOD|1|b|U|2075
7ZOD|1|b|U|2076
7ZOD|1|b|A|2077
*
7ZOD|1|b|U|2243
7ZOD|1|b|U|2244
7ZOD|1|b|U|2245
7ZOD|1|b|G|2246
*
7ZOD|1|b|C|2258
7ZOD|1|b|U|2259
*
7ZOD|1|b|A|2281
7ZOD|1|b|G|2282
7ZOD|1|b|C|2283
7ZOD|1|b|A|2284
*
7ZOD|1|b|U|2384
7ZOD|1|b|C|2385
7ZOD|1|b|A|2386
7ZOD|1|b|U|2387
7ZOD|1|b|A|2388
7ZOD|1|b|G|2389
7ZOD|1|b|U|2390
7ZOD|1|b|G|2391
7ZOD|1|b|A|2392
7ZOD|1|b|U|2393
7ZOD|1|b|C|2394
7ZOD|1|b|C|2395
*
7ZOD|1|b|G|2421
7ZOD|1|b|C|2422
7ZOD|1|b|U|2423
7ZOD|1|b|C|2424
7ZOD|1|b|A|2425
7ZOD|1|b|A|2426
7ZOD|1|b|C|2427
7ZOD|1|b|G|2428
7ZOD|1|b|G|2429
7ZOD|1|b|A|2430
7ZOD|1|b|U|2431
7ZOD|1|b|A|2432
7ZOD|1|b|A|2433
7ZOD|1|b|A|2434
7ZOD|1|b|A|2435
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain 4
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain v
- Transfer RNA; tRNA
- Chain y
- 50S ribosomal protein L27
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