J6_7ZS5_001

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

7ZS5|1|1|A|67, 7ZS5|1|1|U|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZS5|1|1|G|22
7ZS5|1|1|A|23
7ZS5|1|1|G|24
7ZS5|1|1|U|25
7ZS5|1|1|A|26
7ZS5|1|1|C|27
*
7ZS5|1|1|G|58
7ZS5|1|1|G|59
7ZS5|1|1|A|60
7ZS5|1|1|A|61
7ZS5|1|1|A|62
7ZS5|1|1|A|63
7ZS5|1|1|G|64
7ZS5|1|1|A|65
7ZS5|1|1|A|66
7ZS5|1|1|A|67
7ZS5|1|1|C|68
*
7ZS5|1|1|G|75
7ZS5|1|1|G|76
7ZS5|1|1|A|77
7ZS5|1|1|U|78
7ZS5|1|1|U|79
*
7ZS5|1|1|A|106
7ZS5|1|1|A|107
7ZS5|1|1|A|108
7ZS5|1|1|A|109
7ZS5|1|1|G|110
*
7ZS5|1|1|C|321
7ZS5|1|1|U|322
7ZS5|1|1|A|323
7ZS5|1|1|A|324
7ZS5|1|1|A|325
7ZS5|1|1|U|326
7ZS5|1|1|A|327
7ZS5|1|1|U|328
7ZS5|1|1|U|329
7ZS5|1|1|G|330
7ZS5|1|1|G|331
*
7ZS5|1|4|C|32
7ZS5|1|4|A|33
7ZS5|1|4|U|34
7ZS5|1|4|C|35

Current chains

Chain 1

25S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain BE

60S ribosomal protein L4-A

Chain BM

60S ribosomal protein L13-A

Chain BO

60S ribosomal protein L15-A

Chain Bi

60S ribosomal protein L35-A

Chain Bj

60S ribosomal protein L36-A

Chain Bk

60S ribosomal protein L37-A