3D structure

PDB id
7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
FAP-80S Complex - Rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
7ZW0|1|LA|A|67, 7ZW0|1|LA|U|329, 7ZW0|1|LD|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ZW0|1|LA|G|22
7ZW0|1|LA|A|23
7ZW0|1|LA|G|24
7ZW0|1|LA|U|25
7ZW0|1|LA|A|26
7ZW0|1|LA|C|27
*
7ZW0|1|LA|G|58
7ZW0|1|LA|G|59
7ZW0|1|LA|A|60
7ZW0|1|LA|A|61
7ZW0|1|LA|A|62
7ZW0|1|LA|A|63
7ZW0|1|LA|G|64
7ZW0|1|LA|A|65
7ZW0|1|LA|A|66
7ZW0|1|LA|A|67
7ZW0|1|LA|C|68
*
7ZW0|1|LA|G|75
7ZW0|1|LA|G|76
7ZW0|1|LA|A|77
7ZW0|1|LA|U|78
7ZW0|1|LA|U|79
*
7ZW0|1|LA|A|106
7ZW0|1|LA|A|107
7ZW0|1|LA|A|108
7ZW0|1|LA|A|109
7ZW0|1|LA|G|110
*
7ZW0|1|LA|C|321
7ZW0|1|LA|U|322
7ZW0|1|LA|A|323
7ZW0|1|LA|A|324
7ZW0|1|LA|A|325
7ZW0|1|LA|U|326
7ZW0|1|LA|A|327
7ZW0|1|LA|U|328
7ZW0|1|LA|U|329
7ZW0|1|LA|G|330
7ZW0|1|LA|G|331
*
7ZW0|1|LD|C|32
7ZW0|1|LD|A|33
7ZW0|1|LD|U|34
7ZW0|1|LD|C|35

Current chains

Chain LA
25S ribosomal RNA (RDN25-1)
Chain LD
5.8S ribosomal RNA (RDN58-1)

Nearby chains

Chain LG
60S ribosomal protein L4-A
Chain LO
60S ribosomal protein L13-A
Chain LQ
60S ribosomal protein L15-A
Chain Lk
60S ribosomal protein L35-A
Chain Ll
60S ribosomal protein L36-A
Chain Lm
60S ribosomal protein L37-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.5446 s