J6_8A3D_001
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8A3D|1|A|A|66, 8A3D|1|C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A3D|1|A|G|21
8A3D|1|A|G|22
8A3D|1|A|C|23
8A3D|1|A|G|24
8A3D|1|A|A|25
8A3D|1|A|C|26
*
8A3D|1|A|G|57
8A3D|1|A|G|58
8A3D|1|A|A|59
8A3D|1|A|G|60
8A3D|1|A|A|61
8A3D|1|A|A|62
8A3D|1|A|G|63
8A3D|1|A|A|64
8A3D|1|A|A|65
8A3D|1|A|A|66
8A3D|1|A|C|67
*
8A3D|1|A|G|74
8A3D|1|A|G|75
8A3D|1|A|A|76
8A3D|1|A|U|77
8A3D|1|A|U|78
*
8A3D|1|A|A|105
8A3D|1|A|A|106
8A3D|1|A|G|107
8A3D|1|A|A|108
8A3D|1|A|G|109
*
8A3D|1|A|C|332
8A3D|1|A|U|333
8A3D|1|A|A|334
8A3D|1|A|A|335
8A3D|1|A|A|336
8A3D|1|A|U|337
8A3D|1|A|A|338
8A3D|1|A|C|339
*
8A3D|1|C|G|33
8A3D|1|C|U|34
8A3D|1|C|C|35
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain b
- Ribosomal protein uL29
- Chain c
- 60S ribosomal protein L36
- Chain d
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
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