J6_8AGV_001
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8AGV|1|f|A|67, 8AGV|1|f|U|329, 8AGV|1|i|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AGV|1|f|G|22
8AGV|1|f|A|23
8AGV|1|f|G|24
8AGV|1|f|U|25
8AGV|1|f|A|26
8AGV|1|f|C|27
*
8AGV|1|f|G|58
8AGV|1|f|G|59
8AGV|1|f|A|60
8AGV|1|f|A|61
8AGV|1|f|A|62
8AGV|1|f|A|63
8AGV|1|f|G|64
8AGV|1|f|A|65
8AGV|1|f|A|66
8AGV|1|f|A|67
8AGV|1|f|C|68
*
8AGV|1|f|G|75
8AGV|1|f|G|76
8AGV|1|f|A|77
8AGV|1|f|U|78
8AGV|1|f|U|79
*
8AGV|1|f|A|106
8AGV|1|f|A|107
8AGV|1|f|A|108
8AGV|1|f|A|109
8AGV|1|f|G|110
*
8AGV|1|f|C|321
8AGV|1|f|U|322
8AGV|1|f|A|323
8AGV|1|f|A|324
8AGV|1|f|A|325
8AGV|1|f|U|326
8AGV|1|f|A|327
8AGV|1|f|U|328
8AGV|1|f|U|329
8AGV|1|f|G|330
8AGV|1|f|G|331
*
8AGV|1|i|C|32
8AGV|1|i|A|33
8AGV|1|i|U|34
8AGV|1|i|C|35
Current chains
- Chain f
- 25S rRNA
- Chain i
- 5.8S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain U
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L36-A
- Chain W
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L4-A
- Chain t
- 60S ribosomal protein L13-A
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