J6_8AGX_001

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

8AGX|1|f|A|67, 8AGX|1|f|U|329, 8AGX|1|i|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AGX|1|f|G|22
8AGX|1|f|A|23
8AGX|1|f|G|24
8AGX|1|f|U|25
8AGX|1|f|A|26
8AGX|1|f|C|27
*
8AGX|1|f|G|58
8AGX|1|f|G|59
8AGX|1|f|A|60
8AGX|1|f|A|61
8AGX|1|f|A|62
8AGX|1|f|A|63
8AGX|1|f|G|64
8AGX|1|f|A|65
8AGX|1|f|A|66
8AGX|1|f|A|67
8AGX|1|f|C|68
*
8AGX|1|f|G|75
8AGX|1|f|G|76
8AGX|1|f|A|77
8AGX|1|f|U|78
8AGX|1|f|U|79
*
8AGX|1|f|A|106
8AGX|1|f|A|107
8AGX|1|f|A|108
8AGX|1|f|A|109
8AGX|1|f|G|110
*
8AGX|1|f|C|321
8AGX|1|f|U|322
8AGX|1|f|A|323
8AGX|1|f|A|324
8AGX|1|f|A|325
8AGX|1|f|U|326
8AGX|1|f|A|327
8AGX|1|f|U|328
8AGX|1|f|U|329
8AGX|1|f|G|330
8AGX|1|f|G|331
*
8AGX|1|i|C|32
8AGX|1|i|A|33
8AGX|1|i|U|34
8AGX|1|i|C|35

Current chains

Chain f

25S rRNA

Chain i

5.8S rRNA

Nearby chains

Chain A

60S ribosomal protein L15-A

Chain U

60S ribosomal protein L35-A

Chain V

60S ribosomal protein L36-A

Chain W

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L4-A

Chain t

60S ribosomal protein L13-A