J6_8AGZ_001

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

8AGZ|1|f|A|67, 8AGZ|1|f|U|329, 8AGZ|1|i|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AGZ|1|f|G|22
8AGZ|1|f|A|23
8AGZ|1|f|G|24
8AGZ|1|f|U|25
8AGZ|1|f|A|26
8AGZ|1|f|C|27
*
8AGZ|1|f|G|58
8AGZ|1|f|G|59
8AGZ|1|f|A|60
8AGZ|1|f|A|61
8AGZ|1|f|A|62
8AGZ|1|f|A|63
8AGZ|1|f|G|64
8AGZ|1|f|A|65
8AGZ|1|f|A|66
8AGZ|1|f|A|67
8AGZ|1|f|C|68
*
8AGZ|1|f|G|75
8AGZ|1|f|G|76
8AGZ|1|f|A|77
8AGZ|1|f|U|78
8AGZ|1|f|U|79
*
8AGZ|1|f|A|106
8AGZ|1|f|A|107
8AGZ|1|f|A|108
8AGZ|1|f|A|109
8AGZ|1|f|G|110
*
8AGZ|1|f|C|321
8AGZ|1|f|U|322
8AGZ|1|f|A|323
8AGZ|1|f|A|324
8AGZ|1|f|A|325
8AGZ|1|f|U|326
8AGZ|1|f|A|327
8AGZ|1|f|U|328
8AGZ|1|f|U|329
8AGZ|1|f|G|330
8AGZ|1|f|G|331
*
8AGZ|1|i|C|32
8AGZ|1|i|A|33
8AGZ|1|i|U|34
8AGZ|1|i|C|35

Current chains

Chain f

25S rRNA

Chain i

5.8S rRNA

Nearby chains

Chain A

60S ribosomal protein L15-A

Chain U

60S ribosomal protein L35-A

Chain V

60S ribosomal protein L36-A

Chain W

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L4-A

Chain t

60S ribosomal protein L13-A