J6_8AGZ_002
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8AGZ|1|f|G|2418, 8AGZ|1|f|C|2760, 8AGZ|1|f|A|2799, 8AGZ|1|f|A|2801, 8AGZ|1|f|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AGZ|1|f|U|2416
8AGZ|1|f|U|2417
8AGZ|1|f|G|2418
8AGZ|1|f|A|2419
*
8AGZ|1|f|U|2611
8AGZ|1|f|U|2612
8AGZ|1|f|U|2613
8AGZ|1|f|G|2614
*
8AGZ|1|f|C|2627
8AGZ|1|f|A|2628
*
8AGZ|1|f|U|2650
8AGZ|1|f|G|2651
8AGZ|1|f|U|2652
8AGZ|1|f|C|2653
*
8AGZ|1|f|G|2754
8AGZ|1|f|C|2755
8AGZ|1|f|C|2756
8AGZ|1|f|U|2757
8AGZ|1|f|A|2758
8AGZ|1|f|U|2759
8AGZ|1|f|C|2760
8AGZ|1|f|G|2761
8AGZ|1|f|A|2762
8AGZ|1|f|U|2763
8AGZ|1|f|C|2764
8AGZ|1|f|C|2765
*
8AGZ|1|f|G|2793
8AGZ|1|f|G|2794
8AGZ|1|f|U|2795
8AGZ|1|f|G|2796
8AGZ|1|f|C|2797
8AGZ|1|f|C|2798
8AGZ|1|f|A|2799
8AGZ|1|f|G|2800
8AGZ|1|f|A|2801
8AGZ|1|f|A|2802
8AGZ|1|f|A|2803
8AGZ|1|f|A|2804
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain D
- 60S ribosomal protein L18-A
- Chain G
- 60S ribosomal protein L21-A
- Chain N
- 60S ribosomal protein L28
- Chain O
- 60S ribosomal protein L29
- Chain b
- 60S ribosomal protein L42-A
- Chain j
- 60S ribosomal protein L2-A
- Chain v
- Eukaryotic translation initiation factor 5A-1
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