J6_8AKN_001

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8AKN|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AKN|1|a|G|45
8AKN|1|a|G|46
*
8AKN|1|a|C|179
8AKN|1|a|G|180
8AKN|1|a|A|181
8AKN|1|a|A|182
8AKN|1|a|C|183
*
8AKN|1|a|G|214
8AKN|1|a|G|215
8AKN|1|a|A|216
8AKN|1|a|A|217
8AKN|1|a|A|218
8AKN|1|a|A|219
8AKN|1|a|G|220
8AKN|1|a|A|221
8AKN|1|a|A|222
8AKN|1|a|A|223
8AKN|1|a|U|224
*
8AKN|1|a|A|231
8AKN|1|a|G|232
8AKN|1|a|A|233
8AKN|1|a|U|234
8AKN|1|a|U|235
*
8AKN|1|a|A|262
8AKN|1|a|G|263
8AKN|1|a|C|264
8AKN|1|a|A|265
8AKN|1|a|G|266
*
8AKN|1|a|C|426
8AKN|1|a|U|427
8AKN|1|a|A|428
8AKN|1|a|A|429
8AKN|1|a|A|430
8AKN|1|a|U|431
8AKN|1|a|A|432
8AKN|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34