J6_8AKN_002
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8AKN|1|a|U|2076, 8AKN|1|a|A|2388, 8AKN|1|a|U|2390, 8AKN|1|a|G|2428, 8AKN|1|a|A|2430, 8AKN|1|a|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AKN|1|a|U|2074
8AKN|1|a|U|2075
8AKN|1|a|U|2076
8AKN|1|a|A|2077
*
8AKN|1|a|U|2243
8AKN|1|a|U|2244
8AKN|1|a|U|2245
8AKN|1|a|G|2246
*
8AKN|1|a|C|2258
8AKN|1|a|U|2259
*
8AKN|1|a|A|2281
8AKN|1|a|G|2282
8AKN|1|a|C|2283
8AKN|1|a|A|2284
*
8AKN|1|a|U|2384
8AKN|1|a|C|2385
8AKN|1|a|A|2386
8AKN|1|a|U|2387
8AKN|1|a|A|2388
8AKN|1|a|G|2389
8AKN|1|a|U|2390
8AKN|1|a|G|2391
8AKN|1|a|A|2392
8AKN|1|a|U|2393
8AKN|1|a|C|2394
8AKN|1|a|C|2395
*
8AKN|1|a|G|2421
8AKN|1|a|C|2422
8AKN|1|a|U|2423
8AKN|1|a|C|2424
8AKN|1|a|A|2425
8AKN|1|a|A|2426
8AKN|1|a|C|2427
8AKN|1|a|G|2428
8AKN|1|a|G|2429
8AKN|1|a|A|2430
8AKN|1|a|U|2431
8AKN|1|a|A|2432
8AKN|1|a|A|2433
8AKN|1|a|A|2434
8AKN|1|a|A|2435
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain Z
- Transfer RNA; tRNA
- Chain c
- 50S ribosomal protein L2
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L27
- Chain w
- 50S ribosomal protein L28
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