J6_8AM9_001

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8AM9|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AM9|1|a|G|45
8AM9|1|a|G|46
*
8AM9|1|a|C|179
8AM9|1|a|G|180
8AM9|1|a|A|181
8AM9|1|a|A|182
8AM9|1|a|C|183
*
8AM9|1|a|G|214
8AM9|1|a|G|215
8AM9|1|a|A|216
8AM9|1|a|A|217
8AM9|1|a|A|218
8AM9|1|a|A|219
8AM9|1|a|G|220
8AM9|1|a|A|221
8AM9|1|a|A|222
8AM9|1|a|A|223
8AM9|1|a|U|224
*
8AM9|1|a|A|231
8AM9|1|a|G|232
8AM9|1|a|A|233
8AM9|1|a|U|234
8AM9|1|a|U|235
*
8AM9|1|a|A|262
8AM9|1|a|G|263
8AM9|1|a|C|264
8AM9|1|a|A|265
8AM9|1|a|G|266
*
8AM9|1|a|C|426
8AM9|1|a|U|427
8AM9|1|a|A|428
8AM9|1|a|A|429
8AM9|1|a|A|430
8AM9|1|a|U|431
8AM9|1|a|A|432
8AM9|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34